Requirements: Basic coding (Java, Python, …), Container (Docker), Basic software engineering experience
Part 1 of 2
In this hands-on workshop, we introduce participants to SimpleVM, a de.NBI Cloud project type that offers easy, point and-click-style configuration of virtual machines and data volumes. SimpleVM offers preconfigured environments for RStudio, Jupyter Notebooks, virtual Desktop environments and more.
The workshop will first give a basic introduction to the Linux command line and then...
OpenStack is the underlying infrastructure of the de.NBI Cloud.
Participants of this workshop will learn how to start one or multiple
virtual machines by using a graphical interface or via an API and get
familiar with basic principles how-to use OpenStack for their projects
e.g. assign floating ips, mount volumes, setup security groups, etc.
Requirements: basic terminal knowledge,...
BiBiGrid is an open source tool hosted at Github for an easy cluster setup inside a cloud environment. It provides a HPC like environment, providing a shared filesystem between all nodes, a Grid Batch Scheduler and a monitoring system on top of Ubuntu LTS or Debian.
In this hands-on session we will learn how to setup a cluster in the cloud using BiBiGrid and how to adjust it to make it fit...
Requirements: Basic coding (Java, Python, …), Container (Docker), Basic software engineering experience
Part 2 of 2
Bioinformatic tools running in Containers or as part of a Conda environment are provided by Bioinformatic communities such as Bioconda and BioContainers. They are essential for reproducible science and will enable you running tools and workflows in the Cloud and workflow management systems. Topics of this workshop are virtualization, packaging and the handling of BioContainers and Bioconda...
